Variant report

Variant	rs635277
Chromosome Location	chr9:136822180-136822181
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136821303..136824220-chr9:136826571..136828241,2	MCF-7	breast:
2	chr9:136821904..136824368-chr9:136852633..136855112,2	MCF-7	breast:
3	chr9:136815263..136820961-chr9:136821414..136825553,6	MCF-7	breast:
4	chr9:136737400..136743457-chr9:136819359..136829756,12	MCF-7	breast:
5	chr9:136729161..136730927-chr9:136820243..136822364,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1633763	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1633764	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2319056	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs471882	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs478393	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs524538	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs526581	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs527316	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs567208	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62576939	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs635323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs635739	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs636651	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs648353	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs653373	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs694511	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1046310	chr9:136762829-136872226	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv894130	chr9:136767346-136906752	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv831748	chr9:136788484-136944326	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv894131	chr9:136792765-136906752	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv466626	chr9:136807770-136835343	Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv615742	chr9:136807770-136835343	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv831749	chr9:136809200-136915764	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	nsv894132	chr9:136813341-136950691	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
13	nsv982642	chr9:136819005-136837069	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2761297	chr9:136819288-136825744	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136817000-136824400	Weak transcription	HepG2	liver
2	chr9:136818200-136823200	Enhancers	Spleen	Spleen
3	chr9:136818600-136823200	Enhancers	Fetal Muscle Leg	muscle
4	chr9:136819000-136822600	Enhancers	Fetal Brain Male	brain
5	chr9:136819000-136822800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr9:136819000-136822800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:136819000-136823200	Enhancers	Fetal Thymus	thymus
8	chr9:136819000-136823200	Enhancers	Lung	lung
9	chr9:136819400-136822400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:136819400-136823000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:136819400-136823000	Enhancers	Fetal Brain Female	brain
12	chr9:136819400-136823200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr9:136819400-136823200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr9:136819400-136823200	Enhancers	Placenta	Placenta
15	chr9:136819600-136822800	Enhancers	Right Ventricle	heart
16	chr9:136819800-136822600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:136819800-136822800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:136819800-136822800	Enhancers	Liver	Liver
19	chr9:136819800-136823200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr9:136819800-136823200	Enhancers	Fetal Muscle Trunk	muscle
21	chr9:136819800-136823200	Enhancers	Pancreas	Pancrea
22	chr9:136820000-136822600	Enhancers	Fetal Intestine Large	intestine
23	chr9:136820800-136822400	Enhancers	Brain Angular Gyrus	brain
24	chr9:136820800-136822800	Enhancers	Brain Germinal Matrix	brain
25	chr9:136820800-136822800	Enhancers	Stomach Mucosa	stomach
26	chr9:136820800-136823000	Enhancers	Left Ventricle	heart
27	chr9:136820800-136823200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr9:136821000-136822200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:136821000-136822400	Flanking Active TSS	Primary B cells from peripheral blood	blood
30	chr9:136821000-136822400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:136821000-136822400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:136821000-136822400	Enhancers	Fetal Kidney	kidney
33	chr9:136821000-136822800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:136821000-136822800	Enhancers	Brain Substantia Nigra	brain
35	chr9:136821000-136822800	Enhancers	Gastric	stomach
36	chr9:136821000-136822800	Enhancers	Ovary	ovary
37	chr9:136821000-136822800	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr9:136821000-136822800	Enhancers	Small Intestine	intestine
39	chr9:136821000-136822800	Flanking Active TSS	HSMM	muscle
40	chr9:136821000-136823000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:136821000-136823000	Enhancers	Fetal Lung	lung
42	chr9:136821000-136823000	Flanking Active TSS	GM12878-XiMat	blood
43	chr9:136821000-136823200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr9:136821000-136823200	Enhancers	Placenta Amnion	Placenta Amnion
45	chr9:136821000-136823200	Enhancers	HMEC	breast
46	chr9:136821000-136823800	Enhancers	NHEK	skin
47	chr9:136821200-136822400	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr9:136821200-136822600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr9:136821200-136822600	Enhancers	Fetal Heart	heart
50	chr9:136821200-136822800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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