Variant report

Variant	rs636202
Chromosome Location	chr6:139843583-139843584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139842023..139844325-chr6:139853923..139855853,2	K562	blood:
2	chr6:139693301..139695661-chr6:139842764..139846349,4	K562	blood:
3	chr6:139841309..139844130-chr6:140279796..140281485,2	K562	blood:
4	chr6:139839378..139842332-chr6:139842713..139845287,3	K562	blood:
5	chr6:139836503..139839268-chr6:139841620..139844665,3	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4896469	0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs589235	0.93[EUR][1000 genomes]
rs590856	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs592423	0.85[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes]
rs608736	0.93[EUR][1000 genomes]
rs628751	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[EUR][1000 genomes]
rs635243	0.97[AFR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs643381	0.92[EUR][1000 genomes]
rs9800462	0.89[CHB][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139832000-139855200	Weak transcription	Right Atrium	heart
2	chr6:139837000-139843600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:139837000-139843600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:139837000-139843600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:139837000-139843600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:139838000-139844000	Weak transcription	Hela-S3	cervix
7	chr6:139840400-139844400	Enhancers	NHEK	skin
8	chr6:139840400-139844800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:139840800-139855200	Weak transcription	Pancreas	Pancrea
10	chr6:139841000-139844800	Enhancers	HMEC	breast
11	chr6:139841000-139854600	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:139841400-139843600	Weak transcription	Adipose Nuclei	Adipose
13	chr6:139841400-139843600	Weak transcription	Esophagus	oesophagus
14	chr6:139841400-139843600	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:139841400-139843600	Weak transcription	Lung	lung
16	chr6:139841400-139843600	Weak transcription	Osteobl	bone
17	chr6:139841400-139843800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:139841600-139843600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:139841600-139843600	Weak transcription	Fetal Heart	heart
20	chr6:139841600-139849400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr6:139841600-139853000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:139841800-139843600	Weak transcription	NHDF-Ad	bronchial
23	chr6:139842000-139846200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:139842600-139854800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:139842600-139861200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:139842800-139843600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:139842800-139843600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:139843400-139843800	Enhancers	Placenta	Placenta
29	chr6:139843400-139844400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:139843400-139844400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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