Variant report

Variant	rs639574
Chromosome Location	chr1:190262404-190262405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10920712	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10920713	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1093040	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11577349	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11584718	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12083426	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12095554	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3860304	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6668152	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6676702	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6679910	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6682679	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6691829	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6695866	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6695984	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72731142	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72731143	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7545105	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548532	chr1:189758772-190371671	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1003035	chr1:190123195-190291554	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv872756	chr1:190164775-190287713	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1013402	chr1:190197674-190332464	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv535246	chr1:190197674-190332464	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	nsv1004868	chr1:190259314-190303769	Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	nsv535247	chr1:190259314-190303769	Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:190249800-190267200	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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