Variant report

Variant	rs639655
Chromosome Location	chr13:110907426-110907427
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11069836	0.81[EUR][1000 genomes]
rs12428423	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs35806534	0.81[EUR][1000 genomes]
rs556099	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs587409	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs59054477	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61963329	0.85[EUR][1000 genomes]
rs663853	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs666351	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110882600-110913600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:110884800-110914000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:110891400-110908600	Weak transcription	Psoas Muscle	Psoas
4	chr13:110894600-110912200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:110897800-110914200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr13:110897800-110914800	Weak transcription	Stomach Mucosa	stomach
7	chr13:110900000-110908600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr13:110900000-110916200	Weak transcription	A549	lung
9	chr13:110900400-110913600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr13:110900600-110913600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr13:110901000-110913600	Weak transcription	Fetal Intestine Large	intestine
12	chr13:110901000-110919400	Weak transcription	Fetal Brain Male	brain
13	chr13:110903000-110914000	Weak transcription	Fetal Intestine Small	intestine
14	chr13:110903400-110908600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr13:110903800-110908600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr13:110903800-110911200	Weak transcription	HMEC	breast
17	chr13:110904200-110908600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr13:110904200-110908800	Weak transcription	Adipose Nuclei	Adipose
19	chr13:110904200-110909200	Weak transcription	Osteobl	bone
20	chr13:110904200-110910000	Weak transcription	HUVEC	blood vessel
21	chr13:110904200-110913600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr13:110904200-110914200	Weak transcription	Esophagus	oesophagus
23	chr13:110904200-110918200	Weak transcription	Pancreas	Pancrea
24	chr13:110904400-110908400	Weak transcription	NHEK	skin
25	chr13:110904400-110908800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr13:110904400-110909200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr13:110906200-110907600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr13:110906200-110908000	Enhancers	NHLF	lung
29	chr13:110906400-110907600	Enhancers	Colon Smooth Muscle	Colon
30	chr13:110906400-110907600	Enhancers	Right Ventricle	heart
31	chr13:110906400-110907600	Enhancers	Stomach Smooth Muscle	stomach
32	chr13:110906400-110907600	Genic enhancers	NH-A	brain
33	chr13:110906400-110907800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr13:110906400-110907800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr13:110906400-110907800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr13:110906400-110907800	Genic enhancers	Fetal Muscle Leg	muscle
37	chr13:110906400-110908000	Enhancers	Right Atrium	heart
38	chr13:110906400-110908000	Enhancers	NHDF-Ad	bronchial
39	chr13:110906400-110909200	Enhancers	Placenta	Placenta
40	chr13:110906600-110910200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr13:110906800-110908400	Weak transcription	Rectal Smooth Muscle	rectum
42	chr13:110906800-110908600	Weak transcription	Ovary	ovary
43	chr13:110906800-110912200	Weak transcription	Aorta	Aorta
44	chr13:110906800-110914200	Weak transcription	Fetal Lung	lung
45	chr13:110906800-110915000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr13:110907000-110907600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr13:110907000-110909600	Weak transcription	Fetal Heart	heart
48	chr13:110907000-110911200	Weak transcription	HSMM	muscle
49	chr13:110907000-110911400	Weak transcription	HSMMtube	muscle
50	chr13:110907200-110907600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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