Variant report

Variant	rs639866
Chromosome Location	chr1:75760951-75760952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:75756515..75758289-chr1:75759865..75761416,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10493564	1.00[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs10493565	1.00[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs10493566	1.00[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs10518500	1.00[JPT][hapmap]
rs10782715	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs11162847	0.82[EUR][1000 genomes]
rs11162849	0.82[EUR][1000 genomes]
rs11162856	0.82[EUR][1000 genomes]
rs11162870	1.00[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs11162873	1.00[CEU][hapmap];0.87[GIH][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs11162878	0.86[EUR][1000 genomes]
rs11162880	0.86[EUR][1000 genomes]
rs11806459	1.00[JPT][hapmap]
rs12095168	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12562352	1.00[CEU][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs12568950	0.86[EUR][1000 genomes]
rs12568990	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1335735	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1415460	0.84[EUR][1000 genomes]
rs1415461	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1505260	1.00[CEU][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs1505261	1.00[CEU][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs1505262	1.00[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs1505263	0.86[EUR][1000 genomes]
rs17096462	0.82[EUR][1000 genomes]
rs17096508	1.00[JPT][hapmap]
rs1856128	1.00[CEU][hapmap]
rs2221459	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs34755141	0.83[EUR][1000 genomes]
rs4369182	0.83[EUR][1000 genomes]
rs4949855	1.00[CHB][hapmap]
rs5006253	0.83[EUR][1000 genomes]
rs57612788	0.86[EUR][1000 genomes]
rs587346	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs587787	0.86[EUR][1000 genomes]
rs588098	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs596098	1.00[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs598609	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs60198223	0.86[EUR][1000 genomes]
rs602981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs611309	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs617196	1.00[JPT][hapmap]
rs619193	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs619696	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.80[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs625357	1.00[JPT][hapmap]
rs632017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs637660	0.86[EUR][1000 genomes]
rs638302	0.87[EUR][1000 genomes]
rs639028	1.00[JPT][hapmap]
rs645513	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs647924	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs648363	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs649352	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs663620	1.00[JPT][hapmap]
rs664268	1.00[JPT][hapmap]
rs665545	1.00[JPT][hapmap]
rs665575	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs666397	0.87[EUR][1000 genomes]
rs667887	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs669806	0.87[EUR][1000 genomes]
rs675962	1.00[JPT][hapmap]
rs679018	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs681689	1.00[JPT][hapmap]
rs681866	1.00[CEU][hapmap];0.93[MKK][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs694025	1.00[JPT][hapmap]
rs7556057	0.90[CEU][hapmap];0.82[GIH][hapmap]
rs976048	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013952	chr1:75716654-75936048	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv535004	chr1:75716654-75936048	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs639866	SLC44A5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links