Variant report

Variant	rs640802
Chromosome Location	chr5:115984328-115984329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs622996	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs647914	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs656581	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115965000-115987200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:115976400-115987000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:115981800-115986200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:115981800-115987000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:115981800-115987200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:115982000-115985600	Weak transcription	Brain Anterior Caudate	brain
7	chr5:115982400-115986000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:115982400-115987200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:115982600-115986400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:115983400-115985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:115983600-115984600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:115983800-115987200	Weak transcription	HepG2	liver
13	chr5:115984000-115986800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:115984000-115986800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr5:115984000-115987000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:115984000-115987200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:115984200-115984600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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