Variant report

Variant	rs6414879
Chromosome Location	chr5:35900889-35900890
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6451233	0.87[AFR][1000 genomes]
rs6893904	0.93[AFR][1000 genomes]
rs7447213	0.86[AFR][1000 genomes]
rs7727840	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35891400-35902400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:35899000-35901400	Enhancers	GM12878-XiMat	blood
3	chr5:35899000-35902800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr5:35899000-35903000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr5:35899000-35903400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:35899000-35906000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr5:35899000-35909200	Enhancers	Fetal Thymus	thymus
8	chr5:35899200-35903000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr5:35899200-35903400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:35899200-35905400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:35899400-35903000	Enhancers	Primary T cells from cord blood	blood
12	chr5:35899400-35903400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr5:35899600-35902600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr5:35899800-35901600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:35899800-35902200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:35899800-35902400	Weak transcription	NHDF-Ad	bronchial
17	chr5:35900000-35901000	Enhancers	Thymus	Thymus
18	chr5:35900000-35901600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr5:35900400-35902400	Flanking Active TSS	Dnd41	blood
20	chr5:35900600-35901000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr5:35900800-35904600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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