Variant report

Variant	rs6415817
Chromosome Location	chr9:118172925-118172926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55924578	1.00[AFR][1000 genomes]
rs56315449	1.00[AFR][1000 genomes]
rs6478162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7040822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750125	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72751861	1.00[AFR][1000 genomes]
rs72753686	1.00[AFR][1000 genomes]
rs72755356	1.00[AFR][1000 genomes]
rs72755361	1.00[AFR][1000 genomes]
rs72755370	1.00[AFR][1000 genomes]
rs72757377	1.00[AFR][1000 genomes]
rs7469776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042957	chr9:118153824-118313540	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118160400-118173600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:118162200-118174000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:118170800-118173400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:118170800-118173600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:118171000-118173600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:118171200-118174000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:118171400-118173200	Weak transcription	NHDF-Ad	bronchial
8	chr9:118171400-118173400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:118171800-118174000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:118172000-118174000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:118172400-118174200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr9:118172800-118173000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:118172800-118173000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr9:118172800-118174400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:118172800-118174600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr9:118172800-118177200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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