Variant report

Variant	rs6417099
Chromosome Location	chr18:45017347-45017348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11659615	0.83[EUR][1000 genomes]
rs6507745	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6507755	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6507756	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6507766	0.86[EUR][1000 genomes]
rs6507767	1.00[EUR][1000 genomes]
rs6507768	1.00[EUR][1000 genomes]
rs6507770	1.00[EUR][1000 genomes]
rs6507772	1.00[EUR][1000 genomes]
rs6507774	1.00[EUR][1000 genomes]
rs7232126	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7237947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7244620	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7407645	1.00[EUR][1000 genomes]
rs7504351	1.00[EUR][1000 genomes]
rs7505129	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9951551	0.86[EUR][1000 genomes]
rs9952257	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45014600-45017600	Weak transcription	Right Atrium	heart
2	chr18:45016600-45017800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr18:45017200-45017600	Enhancers	Left Ventricle	heart
4	chr18:45017200-45017600	Enhancers	Right Ventricle	heart
5	chr18:45017200-45017800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr18:45017200-45018000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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