Variant report

Variant	rs641862
Chromosome Location	chr13:110790232-110790233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110781644..110784725-chr13:110789802..110792162,3	MCF-7	breast:
2	chr13:110790128..110791725-chr13:110793151..110794928,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1151422	0.95[AFR][1000 genomes]
rs595240	0.95[AFR][1000 genomes]
rs664984	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901006	chr13:110748857-110806490	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv456115	chr13:110756664-110806490	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv563100	chr13:110756664-110806490	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110780600-110790400	Weak transcription	Spleen	Spleen
2	chr13:110784400-110790400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:110789200-110790400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
4	chr13:110789200-110790600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
5	chr13:110789200-110791000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr13:110789200-110791600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr13:110789400-110790400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
8	chr13:110789400-110790400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
9	chr13:110789400-110790400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr13:110789400-110790400	Flanking Active TSS	Hela-S3	cervix
11	chr13:110789400-110790400	Flanking Active TSS	NHEK	skin
12	chr13:110789400-110791200	Active TSS	Brain Anterior Caudate	brain
13	chr13:110789400-110791400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr13:110789400-110791600	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr13:110789600-110790400	Enhancers	Primary B cells from peripheral blood	blood
16	chr13:110789600-110790400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr13:110789600-110790400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:110789600-110790400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:110789600-110790400	Flanking Active TSS	Fetal Brain Female	brain
20	chr13:110789600-110790400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr13:110789600-110790600	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr13:110789600-110790600	Flanking Active TSS	HMEC	breast
23	chr13:110789600-110790600	Flanking Active TSS	HSMM	muscle
24	chr13:110789600-110790600	Flanking Active TSS	Osteobl	bone
25	chr13:110789600-110790800	Active TSS	Right Ventricle	heart
26	chr13:110789600-110791200	Active TSS	H9 Cell Line	embryonic stem cell
27	chr13:110789600-110791200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr13:110789600-110791400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr13:110789600-110791400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
30	chr13:110789600-110791400	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr13:110789600-110791400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr13:110789600-110791400	Flanking Bivalent TSS/Enh	Dnd41	blood
33	chr13:110789800-110790400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr13:110789800-110790400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr13:110789800-110790400	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
36	chr13:110789800-110790400	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr13:110789800-110790400	Weak transcription	Gastric	stomach
38	chr13:110789800-110791000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:110789800-110791000	Active TSS	Brain Cingulate Gyrus	brain
40	chr13:110789800-110791000	Active TSS	Brain Substantia Nigra	brain
41	chr13:110789800-110791000	Active TSS	Right Atrium	heart
42	chr13:110789800-110791200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr13:110790000-110790400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr13:110790000-110790400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr13:110790000-110790400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr13:110790000-110790400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr13:110790000-110790400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
48	chr13:110790000-110790400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
49	chr13:110790000-110790400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
50	chr13:110790000-110790400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood

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