The 2.0 version of rSNPBase

Variant report

Variant rs6421496
Chromosome Location chr1:56915593-56915594
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56905400-56942600 Weak transcription Gastric stomach
2 chr1:56908400-56916800 Weak transcription Brain Anterior Caudate brain
3 chr1:56909200-56915800 Enhancers HepG2 liver
4 chr1:56910000-56916200 Enhancers Liver Liver
5 chr1:56912000-56916200 Enhancers Right Atrium heart
6 chr1:56912000-56916400 Enhancers Hela-S3 cervix
7 chr1:56912000-56916600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr1:56912000-56916600 Enhancers Left Ventricle heart
9 chr1:56912600-56915600 Weak transcription iPS-20b Cell Line embryonic stem cell
10 chr1:56912800-56915600 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr1:56912800-56915800 Weak transcription Brain Substantia Nigra brain
12 chr1:56912800-56915800 Weak transcription Ovary ovary
13 chr1:56912800-56918600 Weak transcription Fetal Heart heart
14 chr1:56912800-56922400 Weak transcription Placenta Amnion Placenta Amnion
15 chr1:56912800-56923400 Weak transcription Spleen Spleen
16 chr1:56913000-56916000 Weak transcription Stomach Smooth Muscle stomach
17 chr1:56913200-56917400 Weak transcription Rectal Smooth Muscle rectum
18 chr1:56913400-56915800 Weak transcription Fetal Stomach stomach
19 chr1:56913600-56917000 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr1:56913800-56917000 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr1:56913800-56917200 Weak transcription Small Intestine intestine
22 chr1:56913800-56917400 Weak transcription Colon Smooth Muscle Colon
23 chr1:56913800-56943200 Weak transcription Aorta Aorta
24 chr1:56914200-56916200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr1:56914200-56916200 Enhancers iPS-15b Cell Line embryonic stem cell
26 chr1:56914200-56916200 Enhancers Lung lung
27 chr1:56914200-56916200 Enhancers Psoas Muscle Psoas
28 chr1:56914200-56916400 Enhancers ES-I3 Cell Line embryonic stem cell
29 chr1:56914200-56917400 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr1:56914200-56919800 Enhancers Fetal Intestine Small intestine
31 chr1:56914400-56919600 Enhancers Fetal Intestine Large intestine
32 chr1:56914600-56917800 Weak transcription Fetal Kidney kidney
33 chr1:56914600-56919800 Enhancers H1 Cell Line embryonic stem cell
34 chr1:56914800-56916000 Enhancers A549 lung
35 chr1:56914800-56916200 Enhancers HUES64 Cell Line embryonic stem cell
36 chr1:56914800-56916200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
37 chr1:56914800-56916200 Enhancers Right Ventricle heart
38 chr1:56914800-56916400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr1:56914800-56916400 Enhancers HUES48 Cell Line embryonic stem cell
40 chr1:56914800-56916600 Enhancers Fetal Muscle Trunk muscle
41 chr1:56914800-56916600 Enhancers Fetal Muscle Leg muscle
42 chr1:56914800-56917200 Weak transcription Fetal Lung lung
43 chr1:56915000-56915800 Weak transcription Duodenum Mucosa Duodenum
44 chr1:56915000-56917200 Weak transcription Pancreas Pancrea
45 chr1:56915000-56922400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr1:56915200-56916000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr1:56915200-56917800 Weak transcription NHDF-Ad bronchial
48 chr1:56915200-56922400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr1:56915200-56935800 Weak transcription NHLF lung
50 chr1:56915400-56915600 Enhancers Adipose Nuclei Adipose

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Last update: Aug 31, 2015