Variant report

Variant	rs6424382
Chromosome Location	chr1:70596535-70596536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17131236	0.82[CHB][hapmap]
rs3753818	0.82[CHB][hapmap]
rs583035	0.80[CEU][hapmap];0.87[MEX][hapmap]
rs587562	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs616511	0.82[CEU][hapmap]
rs621996	0.82[CHB][hapmap];0.85[CHD][hapmap];0.83[MEX][hapmap]
rs650740	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs661765	0.80[CEU][hapmap]
rs6664709	0.87[EUR][1000 genomes]
rs6666941	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6424382	SERBP1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70557000-70599600	Weak transcription	Fetal Brain Female	brain
2	chr1:70583800-70599600	Weak transcription	Fetal Heart	heart
3	chr1:70588400-70599000	Weak transcription	Brain Germinal Matrix	brain
4	chr1:70595600-70596800	Enhancers	Liver	Liver
5	chr1:70595800-70596600	Enhancers	Fetal Stomach	stomach
6	chr1:70596400-70598600	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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