Variant report

Variant	rs642510
Chromosome Location	chr18:8856633-8856634
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10502384	0.98[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12605622	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4798696	0.82[ASN][1000 genomes]
rs595612	0.89[AFR][1000 genomes]
rs624756	0.83[ASN][1000 genomes]
rs624855	0.83[ASN][1000 genomes]
rs625719	0.83[AFR][1000 genomes]
rs632355	0.81[ASN][1000 genomes]
rs670578	0.89[AFR][1000 genomes]
rs673730	0.81[ASN][1000 genomes]
rs689956	0.86[AFR][1000 genomes]
rs690206	0.98[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs690237	0.89[AFR][1000 genomes]
rs690517	0.89[AFR][1000 genomes]
rs690540	0.91[EUR][1000 genomes]
rs690570	1.00[ASW][hapmap];0.85[CHD][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv833584	chr18:8728616-8904213	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv909363	chr18:8775184-8858086	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8854800-8858800	Weak transcription	A549	lung
2	chr18:8854800-8859200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:8855200-8859000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr18:8855400-8859000	Weak transcription	NHLF	lung
5	chr18:8855400-8860200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr18:8856000-8856800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr18:8856000-8857000	Enhancers	NHEK	skin
8	chr18:8856000-8857200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr18:8856000-8857400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr18:8856200-8856800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:8856200-8856800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr18:8856200-8856800	Enhancers	HMEC	breast
13	chr18:8856200-8857000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr18:8856200-8857000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr18:8856200-8857000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr18:8856600-8859000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr18:8856600-8860000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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