The 2.0 version of rSNPBase

Variant report

Variant rs6425224
Chromosome Location chr1:173364102-173364103
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:28 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173345600-173368000 Weak transcription Primary T cells from cord blood blood
2 chr1:173347200-173375000 Weak transcription Spleen Spleen
3 chr1:173348600-173389400 Weak transcription Right Ventricle heart
4 chr1:173354000-173379800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr1:173354800-173376000 Weak transcription Primary B cells from cord blood blood
6 chr1:173355400-173379800 Weak transcription Pancreas Pancrea
7 chr1:173356400-173371400 Weak transcription GM12878-XiMat blood
8 chr1:173361600-173368400 Weak transcription H9 Cell Line embryonic stem cell
9 chr1:173362000-173364200 Enhancers HSMMtube muscle
10 chr1:173362400-173369600 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr1:173362600-173371200 Weak transcription Stomach Smooth Muscle stomach
12 chr1:173362600-173381200 Weak transcription Ovary ovary
13 chr1:173362800-173371600 Weak transcription Left Ventricle heart
14 chr1:173362800-173374400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr1:173362800-173375800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr1:173362800-173379800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr1:173362800-173382600 Weak transcription Fetal Heart heart
18 chr1:173363000-173365000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr1:173363000-173365000 Weak transcription Hela-S3 cervix
20 chr1:173363000-173365200 Weak transcription NHEK skin
21 chr1:173363000-173374200 Weak transcription HMEC breast
22 chr1:173363000-173374400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr1:173363000-173375800 Weak transcription K562 blood
24 chr1:173363000-173379000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr1:173363400-173374200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr1:173363800-173389400 Weak transcription Fetal Lung lung
27 chr1:173364000-173374200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:173364000-173376000 Weak transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015