Variant report

Variant	rs6426084
Chromosome Location	chr1:224434613-224434614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17257260	1.00[AMR][1000 genomes]
rs1989305	1.00[AMR][1000 genomes]
rs4654044	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873223	chr1:224367232-224467117	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv8868	chr1:224383023-224752531	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224401800-224475400	Weak transcription	Esophagus	oesophagus
2	chr1:224411600-224438000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:224411600-224454400	Weak transcription	Psoas Muscle	Psoas
4	chr1:224412400-224473600	Weak transcription	HepG2	liver
5	chr1:224414200-224438000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:224415000-224436200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:224415000-224440000	Weak transcription	Fetal Kidney	kidney
8	chr1:224415600-224435000	Weak transcription	Gastric	stomach
9	chr1:224415800-224435600	Weak transcription	NHLF	lung
10	chr1:224415800-224435800	Weak transcription	Brain Angular Gyrus	brain
11	chr1:224416000-224436600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:224416000-224465600	Weak transcription	Small Intestine	intestine
13	chr1:224417800-224435600	Weak transcription	Colonic Mucosa	Colon
14	chr1:224418000-224435400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:224418000-224436600	Weak transcription	Right Ventricle	heart
16	chr1:224418400-224439400	Weak transcription	HSMMtube	muscle
17	chr1:224419200-224435600	Weak transcription	Brain Anterior Caudate	brain
18	chr1:224419200-224436600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr1:224420400-224435600	Weak transcription	HMEC	breast
20	chr1:224423800-224439400	Weak transcription	Right Atrium	heart
21	chr1:224424000-224435400	Weak transcription	Osteobl	bone
22	chr1:224424200-224435200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr1:224424200-224435400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr1:224424200-224435400	Weak transcription	NHEK	skin
25	chr1:224424200-224436000	Weak transcription	Fetal Lung	lung
26	chr1:224424400-224434800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:224424400-224435800	Weak transcription	Colon Smooth Muscle	Colon
28	chr1:224424600-224451600	Weak transcription	Aorta	Aorta
29	chr1:224424600-224479600	Weak transcription	Pancreas	Pancrea
30	chr1:224424800-224454200	Weak transcription	HSMM	muscle
31	chr1:224425000-224434800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:224425400-224435400	Weak transcription	Brain Germinal Matrix	brain
33	chr1:224425600-224470000	Weak transcription	NHDF-Ad	bronchial
34	chr1:224426400-224435400	Weak transcription	Brain Substantia Nigra	brain
35	chr1:224426600-224439200	Weak transcription	Spleen	Spleen
36	chr1:224427000-224435400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr1:224427400-224435400	Weak transcription	Ovary	ovary
38	chr1:224427600-224435600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:224427600-224435800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:224427600-224436000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr1:224427600-224438200	Strong transcription	Fetal Intestine Small	intestine
42	chr1:224427800-224435600	Weak transcription	GM12878-XiMat	blood
43	chr1:224427800-224436200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr1:224427800-224444000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr1:224428600-224435800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr1:224429000-224436200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr1:224429000-224438600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:224430200-224438600	Strong transcription	Fetal Stomach	stomach
49	chr1:224431200-224490400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr1:224432800-224437800	Strong transcription	HUES48 Cell Line	embryonic stem cell

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