Variant report

Variant	rs6427581
Chromosome Location	chr1:161238059-161238060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11265582	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12049499	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2501871	0.99[ASN][1000 genomes]
rs2501875	0.99[ASN][1000 genomes]
rs4075971	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4436408	0.87[ASW][hapmap];0.82[CEU][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes]
rs55748379	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6427580	0.86[CHB][hapmap];0.87[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6657761	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6682220	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651035	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161236600-161238200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:161237000-161238200	Enhancers	Primary hematopoietic stem cells	blood
3	chr1:161237000-161238800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:161237200-161238200	Enhancers	Primary B cells from peripheral blood	blood
5	chr1:161237200-161238200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr1:161237200-161238800	Enhancers	Placenta	Placenta
7	chr1:161237400-161242800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:161237400-161242800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr1:161237400-161250600	Weak transcription	Pancreas	Pancrea
10	chr1:161238000-161242600	Weak transcription	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links