Variant report

Variant	rs6428006
Chromosome Location	chr1:203349652-203349653
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs34961776	0.94[ASN][1000 genomes]
rs4291556	0.94[ASN][1000 genomes]
rs6428005	1.00[ASN][1000 genomes]
rs6428008	0.94[ASN][1000 genomes]
rs6661852	0.88[ASN][1000 genomes]
rs6662062	0.94[ASN][1000 genomes]
rs6683534	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072156	0.94[ASN][1000 genomes]
rs73072176	0.94[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6428006	PPFIA4	cis	cerebellum	SCAN
rs6428006	NEK7	cis	parietal	SCAN
rs6428006	CHIT1	cis	parietal	SCAN
rs6428006	RPS10P7	cis	parietal	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:203347600-203350400	Enhancers	Placenta Amnion	Placenta Amnion
2	chr1:203347600-203350600	Enhancers	Aorta	Aorta
3	chr1:203347600-203350600	Enhancers	Left Ventricle	heart
4	chr1:203347600-203350800	Enhancers	Adipose Nuclei	Adipose
5	chr1:203347600-203351600	Enhancers	Colon Smooth Muscle	Colon
6	chr1:203347600-203351800	Enhancers	Fetal Stomach	stomach
7	chr1:203347600-203351800	Enhancers	Ovary	ovary
8	chr1:203347800-203350800	Enhancers	Fetal Muscle Leg	muscle
9	chr1:203347800-203352200	Enhancers	Right Atrium	heart
10	chr1:203348000-203351000	Weak transcription	Right Ventricle	heart
11	chr1:203348000-203351800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr1:203348400-203351600	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr1:203348600-203349800	Weak transcription	Fetal Kidney	kidney
14	chr1:203348600-203352200	Enhancers	Primary B cells from peripheral blood	blood
15	chr1:203348800-203349800	Enhancers	Primary B cells from cord blood	blood
16	chr1:203348800-203349800	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr1:203348800-203351600	Enhancers	Fetal Heart	heart
18	chr1:203349000-203351600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr1:203349200-203350000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:203349200-203350000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr1:203349200-203350200	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr1:203349200-203350400	Weak transcription	Brain Angular Gyrus	brain
23	chr1:203349400-203350000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr1:203349400-203350200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:203349400-203350400	Weak transcription	Fetal Intestine Small	intestine
26	chr1:203349400-203350400	Weak transcription	Placenta	Placenta
27	chr1:203349400-203350400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr1:203349400-203350600	Weak transcription	Fetal Lung	lung
29	chr1:203349400-203351800	Enhancers	Rectal Smooth Muscle	rectum
30	chr1:203349600-203351000	Flanking Active TSS	GM12878-XiMat	blood
31	chr1:203349600-203352000	Enhancers	Stomach Smooth Muscle	stomach

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