Variant report

Variant rs6429553
Chromosome Location chr1:45480733-45480734
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45478400-45483200 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:45478600-45482600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:45478600-45500000 Weak transcription Aorta Aorta
4 chr1:45478800-45481400 Transcr. at gene 5' and 3' K562 blood
5 chr1:45478800-45482200 Weak transcription Psoas Muscle Psoas
6 chr1:45478800-45482600 Weak transcription ES-WA7 Cell Line embryonic stem cell
7 chr1:45478800-45484000 Weak transcription Right Atrium heart
8 chr1:45479000-45480800 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
9 chr1:45479000-45480800 Genic enhancers Fetal Adrenal Gland Adrenal Gland
10 chr1:45479000-45480800 Genic enhancers Fetal Muscle Trunk muscle
11 chr1:45479000-45480800 Genic enhancers Fetal Muscle Leg muscle
12 chr1:45479000-45480800 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr1:45479000-45480800 Genic enhancers Stomach Smooth Muscle stomach
14 chr1:45479000-45480800 Genic enhancers NH-A brain
15 chr1:45479000-45482800 Weak transcription iPS-18 Cell Line embryonic stem cell
16 chr1:45479000-45483400 Weak transcription Primary B cells from cord blood blood
17 chr1:45479000-45484200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr1:45479000-45484200 Weak transcription Esophagus oesophagus
19 chr1:45479000-45485200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr1:45479000-45493000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr1:45479200-45480800 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr1:45479200-45480800 Genic enhancers Breast Myoepithelial Primary Cells Breast
23 chr1:45479200-45480800 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
24 chr1:45479200-45480800 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:45479200-45480800 Genic enhancers Ovary ovary
26 chr1:45479200-45480800 Genic enhancers Skeletal Muscle Male skeletal muscle
27 chr1:45479200-45480800 Genic enhancers Dnd41 blood
28 chr1:45479200-45480800 Genic enhancers HUVEC blood vessel
29 chr1:45479200-45481200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
30 chr1:45479200-45482000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr1:45479200-45484200 Weak transcription Primary T helper naive cells fromperipheralblood blood
32 chr1:45479400-45480800 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr1:45479400-45480800 Genic enhancers H9 Derived Neuron Cultured Cells ES cell derived
34 chr1:45479400-45480800 Genic enhancers Muscle Satellite Cultured Cells --
35 chr1:45479400-45481000 Genic enhancers Skeletal Muscle Female skeletal muscle
36 chr1:45479400-45481200 Strong transcription Thymus Thymus
37 chr1:45479400-45481600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr1:45479400-45481600 Strong transcription HUES6 Cell Line embryonic stem cell
39 chr1:45479400-45481600 Strong transcription Rectal Mucosa Donor 29 rectum
40 chr1:45479400-45481600 Strong transcription NHEK skin
41 chr1:45479400-45482000 Strong transcription Fetal Lung lung
42 chr1:45479400-45484200 Weak transcription ES-I3 Cell Line embryonic stem cell
43 chr1:45479600-45480800 Genic enhancers Cortex derived primary cultured neurospheres brain
44 chr1:45479600-45481200 Strong transcription HUES64 Cell Line embryonic stem cell
45 chr1:45479600-45481200 Strong transcription Colonic Mucosa Colon
46 chr1:45479600-45481400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
47 chr1:45479600-45481400 Strong transcription NHLF lung
48 chr1:45479600-45481600 Strong transcription Placenta Placenta
49 chr1:45479600-45481600 Strong transcription Fetal Stomach stomach
50 chr1:45479600-45481800 Strong transcription Primary T cells from cord blood blood

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