Variant report

Variant	rs6429923
Chromosome Location	chr2:142578483-142578484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11884813	0.90[MEX][hapmap]
rs11886631	0.86[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs11902392	0.84[CHD][hapmap];0.86[MEX][hapmap]
rs1435597	0.92[JPT][hapmap]
rs1898016	0.81[MEX][hapmap]
rs6721397	1.00[JPT][hapmap]
rs6721469	1.00[JPT][hapmap]
rs6739229	0.89[MEX][hapmap]
rs7561165	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875249	chr2:142527100-142614345	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv875250	chr2:142540240-142614345	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1010008	chr2:142574406-142606021	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142578400-142579000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr2:142578400-142579000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr2:142578400-142579000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:142578400-142579000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr2:142578400-142579200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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