Variant report

Variant	rs6432025
Chromosome Location	chr2:9758621-9758622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:9758466..9761411-chr2:9769202..9771087,3	MCF-7	breast:
2	chr2:9615450..9617301-chr2:9758199..9759885,2	MCF-7	breast:
3	chr2:9694505..9696556-chr2:9756611..9759077,2	K562	blood:

Variant related genes	Relation type
ENSG00000134330	Chromatin interaction
ENSG00000151694	Chromatin interaction
ENSG00000271855	Chromatin interaction
ENSG00000134308	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10169269	0.91[ASN][1000 genomes]
rs10210225	0.94[ASN][1000 genomes]
rs10929590	0.94[ASN][1000 genomes]
rs10929591	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1111976	0.94[ASN][1000 genomes]
rs11674769	0.87[YRI][hapmap];0.97[ASN][1000 genomes]
rs11674777	1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[ASN][1000 genomes]
rs11887863	0.94[ASN][1000 genomes]
rs11890807	1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[ASN][1000 genomes]
rs11902264	1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[ASN][1000 genomes]
rs12476008	1.00[JPT][hapmap]
rs12692388	0.91[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.88[YRI][hapmap];0.94[ASN][1000 genomes]
rs13415136	0.97[ASN][1000 genomes]
rs1524667	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16867062	1.00[JPT][hapmap]
rs16867074	1.00[JPT][hapmap]
rs2357157	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3791748	1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[ASN][1000 genomes]
rs4668625	0.87[CEU][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6432018	1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.88[YRI][hapmap];0.97[ASN][1000 genomes]
rs6432019	0.97[ASN][1000 genomes]
rs6432020	0.97[ASN][1000 genomes]
rs6432023	1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[ASN][1000 genomes]
rs6706227	0.94[ASN][1000 genomes]
rs6720625	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6734469	1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[ASN][1000 genomes]
rs6745213	1.00[ASN][1000 genomes]
rs7556678	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7556757	0.94[ASN][1000 genomes]
rs7565646	0.97[ASN][1000 genomes]
rs7569485	0.89[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.88[YRI][hapmap];0.91[ASN][1000 genomes]
rs7596929	0.94[ASN][1000 genomes]
rs7597961	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580915	chr2:9308148-9844178	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9696800-9767600	Weak transcription	Gastric	stomach
2	chr2:9741400-9760000	Weak transcription	Fetal Kidney	kidney
3	chr2:9744800-9766800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:9747800-9760200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr2:9748600-9765600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:9748600-9766600	Weak transcription	Aorta	Aorta
7	chr2:9748600-9767600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:9748800-9758800	Weak transcription	Thymus	Thymus
9	chr2:9748800-9761200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:9748800-9763400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:9749000-9764600	Weak transcription	Lung	lung
12	chr2:9749000-9769200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr2:9749200-9764000	Weak transcription	Fetal Brain Male	brain
14	chr2:9749200-9768000	Weak transcription	Stomach Mucosa	stomach
15	chr2:9749400-9762800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr2:9749600-9768200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr2:9751000-9759000	Genic enhancers	A549	lung
18	chr2:9751600-9758800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr2:9751800-9758800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr2:9752200-9762200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr2:9752200-9768200	Weak transcription	Colonic Mucosa	Colon
22	chr2:9752400-9758800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr2:9753000-9767000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr2:9753200-9763000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr2:9753200-9767000	Weak transcription	Spleen	Spleen
26	chr2:9753800-9761400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr2:9754000-9759400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr2:9754000-9767200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr2:9754200-9763600	Weak transcription	Right Ventricle	heart
30	chr2:9754200-9764000	Weak transcription	Right Atrium	heart
31	chr2:9754200-9764200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr2:9754200-9764200	Weak transcription	Pancreas	Pancrea
33	chr2:9754200-9767600	Weak transcription	Esophagus	oesophagus
34	chr2:9754200-9768800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr2:9754400-9762600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr2:9754600-9762600	Weak transcription	NH-A	brain
37	chr2:9755000-9759200	Weak transcription	Adipose Nuclei	Adipose
38	chr2:9755000-9765600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr2:9755200-9759800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr2:9755400-9759200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr2:9755400-9761200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr2:9755400-9763600	Weak transcription	Fetal Stomach	stomach
43	chr2:9755400-9765600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr2:9755800-9760000	Weak transcription	Fetal Brain Female	brain
45	chr2:9756000-9758800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr2:9756000-9758800	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr2:9756000-9758800	Strong transcription	NHDF-Ad	bronchial
48	chr2:9756200-9758800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr2:9756200-9759400	Weak transcription	Brain Anterior Caudate	brain
50	chr2:9756200-9759800	Weak transcription	Brain Cingulate Gyrus	brain

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