Variant report

Variant	rs6432091
Chromosome Location	chr2:10445681-10445682
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:10444401..10446241-chr2:10459560..10462142,2	MCF-7	breast:
2	chr2:10444518..10446784-chr2:10468775..10471116,3	K562	blood:
3	chr2:10422162..10423929-chr2:10444657..10446996,2	K562	blood:
4	chr2:10292318..10295172-chr2:10445381..10448141,2	K562	blood:
5	chr2:10445053..10449309-chr2:10587064..10589564,3	K562	blood:
6	chr2:10434745..10440361-chr2:10440769..10446494,13	MCF-7	breast:
7	chr2:10328419..10328932-chr2:10445333..10446204,3	MCF-7	breast:
8	chr2:10444868..10446437-chr2:10448436..10450157,2	MCF-7	breast:
9	chr2:10445047..10447239-chr2:10547484..10549906,2	MCF-7	breast:
10	chr2:10444615..10447130-chr2:10577332..10580177,3	K562	blood:
11	chr2:10440747..10444500-chr2:10444792..10449772,7	MCF-7	breast:
12	chr2:10445536..10447284-chr2:10469328..10472288,2	MCF-7	breast:
13	chr2:10444182..10445702-chr2:10452012..10454686,2	MCF-7	breast:
14	chr2:10445610..10447546-chr2:10451683..10455005,3	MCF-7	breast:
15	chr2:10261047..10264754-chr2:10441936..10445688,4	MCF-7	breast:
16	chr2:10284792..10287057-chr2:10444307..10446479,2	K562	blood:
17	chr2:10376539..10378609-chr2:10444548..10446781,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115756	Chromatin interaction
ENSG00000115758	Chromatin interaction
ENSG00000257135	Chromatin interaction
ENSG00000171848	Chromatin interaction
ENSG00000206898	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2192670	0.88[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2884208	0.92[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4668676	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs62128554	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6432090	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873639	chr2:10372061-10475308	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10442200-10446000	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr2:10442200-10446000	Active TSS	HSMMtube	muscle
3	chr2:10443200-10446000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr2:10443200-10446000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:10443200-10446200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:10443400-10445800	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr2:10443400-10446000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr2:10443800-10445800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:10443800-10446000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr2:10443800-10446000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
11	chr2:10444200-10446200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:10444200-10446800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr2:10444400-10446000	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr2:10444400-10446000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr2:10444400-10446000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:10444400-10446000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:10444400-10446200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr2:10444400-10446200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr2:10444600-10445800	Flanking Active TSS	Fetal Intestine Large	intestine
20	chr2:10444600-10445800	Flanking Active TSS	Fetal Lung	lung
21	chr2:10444600-10445800	Active TSS	Psoas Muscle	Psoas
22	chr2:10444600-10445800	Flanking Active TSS	HUVEC	blood vessel
23	chr2:10444600-10446000	Flanking Active TSS	Hela-S3	cervix
24	chr2:10444600-10446000	Flanking Active TSS	HSMM	muscle
25	chr2:10444600-10446200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr2:10444600-10446200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr2:10444600-10446200	Enhancers	Spleen	Spleen
28	chr2:10444600-10446400	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr2:10444600-10446600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr2:10444800-10445800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr2:10444800-10446000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr2:10444800-10446000	Flanking Active TSS	Fetal Intestine Small	intestine
33	chr2:10444800-10446000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr2:10444800-10446200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr2:10444800-10447800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr2:10445000-10445800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:10445000-10445800	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr2:10445000-10445800	Enhancers	Brain Hippocampus Middle	brain
39	chr2:10445000-10445800	Active TSS	Stomach Smooth Muscle	stomach
40	chr2:10445000-10446000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:10445000-10446000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
42	chr2:10445000-10446000	Enhancers	Brain Angular Gyrus	brain
43	chr2:10445000-10446000	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr2:10445000-10446000	Enhancers	Esophagus	oesophagus
45	chr2:10445000-10446000	Bivalent Enhancer	Placenta	Placenta
46	chr2:10445000-10446000	Enhancers	GM12878-XiMat	blood
47	chr2:10445000-10446000	Flanking Active TSS	Osteobl	bone
48	chr2:10445000-10446200	Enhancers	Primary B cells from cord blood	blood
49	chr2:10445000-10446200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr2:10445000-10446200	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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