Variant report

Variant	rs6432108
Chromosome Location	chr2:10736650-10736651
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10207845	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1023587	0.90[EUR][1000 genomes]
rs1023588	0.90[EUR][1000 genomes]
rs10490187	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11673879	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11681219	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11684569	0.81[ASN][1000 genomes]
rs12476022	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12621903	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13019722	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13035291	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1990614	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2015525	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2110779	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2287063	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34140737	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34562923	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34565728	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34851538	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34965800	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35364825	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35454548	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35688901	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36065209	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3732111	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3821196	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4668692	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669597	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4669600	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4669601	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56403646	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56902481	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59199925	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62127163	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62127196	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6432106	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6432127	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432129	0.91[EUR][1000 genomes]
rs6716907	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6733161	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752034	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752145	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7579314	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7594513	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594816	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9678985	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007185	chr2:10540386-10791743	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv833370	chr2:10625149-10785402	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1009897	chr2:10627248-10751468	Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1000953	chr2:10717304-10921805	Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv535584	chr2:10717304-10921805	Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv833381	chr2:10723465-10911284	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10709200-10746800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:10712600-10742000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:10719800-10746600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:10720000-10746400	Strong transcription	Dnd41	blood
5	chr2:10720400-10740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:10720800-10739200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr2:10721000-10755000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:10721200-10746800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr2:10722000-10738200	Strong transcription	Fetal Muscle Leg	muscle
10	chr2:10722800-10741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:10725600-10744000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:10725600-10758800	Weak transcription	Stomach Mucosa	stomach
13	chr2:10725600-10793400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr2:10725800-10787000	Weak transcription	Fetal Heart	heart
15	chr2:10726000-10738400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:10726000-10746200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr2:10726000-10747600	Strong transcription	HepG2	liver
18	chr2:10727600-10737000	Strong transcription	Fetal Intestine Small	intestine
19	chr2:10727600-10739400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr2:10727800-10740400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr2:10728200-10737800	Weak transcription	NH-A	brain
22	chr2:10729200-10738000	Weak transcription	HMEC	breast
23	chr2:10729200-10741600	Weak transcription	Pancreas	Pancrea
24	chr2:10729200-10754200	Weak transcription	NHLF	lung
25	chr2:10729200-10760000	Weak transcription	Brain Angular Gyrus	brain
26	chr2:10729400-10740800	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr2:10729400-10741600	Weak transcription	Right Ventricle	heart
28	chr2:10729400-10781800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr2:10729400-10798400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr2:10729600-10738000	Weak transcription	Small Intestine	intestine
31	chr2:10729600-10741400	Weak transcription	Colonic Mucosa	Colon
32	chr2:10729600-10741400	Weak transcription	Spleen	Spleen
33	chr2:10729600-10742000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr2:10729800-10738000	Weak transcription	Fetal Kidney	kidney
35	chr2:10729800-10744800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr2:10730000-10747600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr2:10730800-10774400	Weak transcription	Psoas Muscle	Psoas
38	chr2:10731000-10741600	Weak transcription	Colon Smooth Muscle	Colon
39	chr2:10731000-10742000	Weak transcription	HSMMtube	muscle
40	chr2:10731200-10736800	Weak transcription	K562	blood
41	chr2:10731400-10752000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr2:10731600-10738000	Weak transcription	Osteobl	bone
43	chr2:10731800-10738600	Weak transcription	Brain Hippocampus Middle	brain
44	chr2:10732000-10737600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr2:10732000-10738200	Weak transcription	Brain Substantia Nigra	brain
46	chr2:10732000-10777600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr2:10732200-10741800	Weak transcription	Brain Anterior Caudate	brain
48	chr2:10732400-10736800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr2:10732400-10741600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr2:10732600-10737000	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links