Variant report

Variant	rs6432194
Chromosome Location	chr2:11584417-11584418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11582548..11585072-chr2:11589512..11591069,2	K562	blood:
2	chr2:11578661..11580841-chr2:11582473..11584908,4	MCF-7	breast:
3	chr2:11583321..11585484-chr2:11620633..11622396,2	MCF-7	breast:
4	chr2:11584170..11586792-chr2:11598194..11600581,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6732604	0.91[ASW][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs73915195	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7608777	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv3460094	chr2:11583401-11588699	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	n/a
4	esv3460095	chr2:11583401-11588699	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11563000-11586800	Weak transcription	Psoas Muscle	Psoas
2	chr2:11572600-11588600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:11575000-11584800	Weak transcription	Esophagus	oesophagus
4	chr2:11575600-11586800	Weak transcription	NHEK	skin
5	chr2:11575800-11597000	Weak transcription	Fetal Heart	heart
6	chr2:11576000-11586800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:11576600-11586600	Weak transcription	Brain Substantia Nigra	brain
8	chr2:11576800-11585000	Weak transcription	Hela-S3	cervix
9	chr2:11576800-11586600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr2:11577000-11589200	Weak transcription	Small Intestine	intestine
11	chr2:11577600-11585000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr2:11577600-11603800	Weak transcription	Colonic Mucosa	Colon
13	chr2:11577800-11586600	Weak transcription	NHDF-Ad	bronchial
14	chr2:11578200-11585200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:11578600-11585000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:11578600-11587200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr2:11578600-11594000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr2:11579000-11585000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:11579000-11586800	Weak transcription	Stomach Mucosa	stomach
20	chr2:11579000-11604800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr2:11579200-11585600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:11579200-11594000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:11579400-11587200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr2:11579800-11590600	Strong transcription	Primary T cells from cord blood	blood
25	chr2:11580000-11585000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr2:11580000-11585600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:11580000-11586600	Weak transcription	Brain Anterior Caudate	brain
28	chr2:11580000-11593800	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr2:11580200-11588400	Weak transcription	Fetal Kidney	kidney
30	chr2:11580200-11588600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr2:11580200-11604000	Weak transcription	Fetal Brain Male	brain
32	chr2:11580400-11585200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr2:11580400-11591800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr2:11580400-11596000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr2:11580600-11594000	Strong transcription	Placenta	Placenta
36	chr2:11580800-11586800	Weak transcription	Ovary	ovary
37	chr2:11581000-11596400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr2:11581200-11597000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr2:11581400-11585400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr2:11581400-11585400	ZNF genes & repeats	GM12878-XiMat	blood
41	chr2:11581600-11585400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:11581800-11585000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr2:11581800-11585000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr2:11581800-11585200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr2:11581800-11589400	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr2:11581800-11593600	Strong transcription	Fetal Muscle Trunk	muscle
47	chr2:11581800-11596400	Strong transcription	Liver	Liver
48	chr2:11582000-11585000	Strong transcription	Primary B cells from cord blood	blood
49	chr2:11582000-11585200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr2:11582200-11584800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links