Variant report

Variant	rs6433297
Chromosome Location	chr2:172376221-172376222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172288399..172297381-chr2:172370978..172381493,22	K562	blood:
2	chr2:172370595..172374063-chr2:172374486..172376934,3	MCF-7	breast:
3	chr2:172376132..172377971-chr2:172413004..172415455,2	MCF-7	breast:
4	chr2:172374965..172377030-chr2:172379284..172381375,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115827	Chromatin interaction
ENSG00000071967	Chromatin interaction
ENSG00000123600	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6433298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832950	chr2:172283513-172488111	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172367000-172378000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:172370800-172378400	Weak transcription	Right Ventricle	heart
3	chr2:172371600-172376400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:172372400-172376400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr2:172373000-172378000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:172373200-172378200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:172373200-172378200	Weak transcription	Osteobl	bone
8	chr2:172373400-172377600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:172373400-172378000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:172373400-172378000	Weak transcription	HSMM	muscle
11	chr2:172373600-172377800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:172373600-172377800	Weak transcription	NHDF-Ad	bronchial
13	chr2:172373600-172378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:172373600-172378200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:172373600-172378200	Weak transcription	NH-A	brain
16	chr2:172373600-172378400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:172373600-172378800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:172373800-172376400	Weak transcription	Fetal Muscle Leg	muscle
19	chr2:172373800-172377000	Weak transcription	Fetal Thymus	thymus
20	chr2:172373800-172377800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:172374400-172378400	Weak transcription	Placenta	Placenta
22	chr2:172375800-172376600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr2:172375800-172376800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:172375800-172377800	Enhancers	HSMMtube	muscle
25	chr2:172375800-172377800	Enhancers	K562	blood
26	chr2:172375800-172378000	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr2:172375800-172378000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:172376200-172376800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr2:172376200-172378000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:172376200-172378000	Enhancers	GM12878-XiMat	blood

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