Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173619231..173622144-chr2:173622780..173624931,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10164414	0.87[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs10168444	0.94[EUR][1000 genomes]
rs10188856	0.85[CHB][hapmap]
rs10189033	0.80[CEU][hapmap];0.91[EUR][1000 genomes]
rs10190070	0.87[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs10203074	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs12619176	0.85[CHB][hapmap]
rs13007746	0.83[ASW][hapmap];0.85[CHB][hapmap]
rs13383922	0.94[EUR][1000 genomes]
rs13413998	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs13418715	0.94[EUR][1000 genomes]
rs13427351	0.94[EUR][1000 genomes]
rs1823611	1.00[ASN][1000 genomes]
rs1863170	1.00[ASN][1000 genomes]
rs2042562	0.85[CHB][hapmap]
rs2042563	1.00[ASN][1000 genomes]
rs2081406	0.85[CHB][hapmap]
rs3754765	0.85[CHB][hapmap]
rs41525849	0.85[CHB][hapmap]
rs4972854	0.85[CHB][hapmap]
rs6433380	0.85[CHB][hapmap]
rs6713665	0.85[CHB][hapmap]
rs6745299	0.85[CHB][hapmap]
rs6755658	0.85[CHB][hapmap]
rs72902250	0.94[EUR][1000 genomes]
rs72902261	0.94[EUR][1000 genomes]
rs7563076	0.85[CHB][hapmap]
rs7584737	0.85[CHB][hapmap]
rs7585545	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173615200-173624200	Weak transcription	Psoas Muscle	Psoas
2	chr2:173618800-173627200	Weak transcription	Fetal Heart	heart

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