Variant report

Variant	rs6433398
Chromosome Location	chr2:174048962-174048963
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:174042344..174044769-chr2:174046655..174049116,2	K562	blood:
2	chr2:174047844..174049361-chr2:174051278..174054008,2	K562	blood:
3	chr2:174047164..174049311-chr2:174061893..174063545,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11888193	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11901996	0.85[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16861304	0.85[CEU][hapmap]
rs35853276	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs3769166	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs3769176	0.93[CEU][hapmap]
rs3769179	0.85[CEU][hapmap]
rs57244347	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6725795	0.84[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6753354	0.85[CEU][hapmap]
rs73016810	0.96[AFR][1000 genomes]
rs73023632	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73033228	0.85[AFR][1000 genomes]
rs73974103	0.84[EUR][1000 genomes]
rs9941608	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:174026000-174069000	Weak transcription	Primary B cells from cord blood	blood
2	chr2:174026600-174083200	Weak transcription	Esophagus	oesophagus
3	chr2:174028400-174054600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:174030000-174052200	Weak transcription	Fetal Lung	lung
5	chr2:174037000-174053000	Weak transcription	Right Atrium	heart
6	chr2:174037400-174054600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:174038200-174049000	Weak transcription	Left Ventricle	heart
8	chr2:174045400-174052800	Weak transcription	Adipose Nuclei	Adipose
9	chr2:174046200-174054200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr2:174046200-174054400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr2:174046200-174055800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:174046400-174049400	Weak transcription	Psoas Muscle	Psoas
13	chr2:174046400-174075800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr2:174046600-174055800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:174046800-174049000	Enhancers	Fetal Heart	heart
16	chr2:174046800-174052800	Weak transcription	Fetal Intestine Small	intestine
17	chr2:174047000-174049400	Enhancers	Rectal Smooth Muscle	rectum
18	chr2:174047000-174062800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:174047200-174052600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr2:174047600-174049000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr2:174047600-174049200	Enhancers	Fetal Stomach	stomach
22	chr2:174047600-174049400	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr2:174047600-174049800	Enhancers	Colon Smooth Muscle	Colon
24	chr2:174047600-174050200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr2:174047600-174050600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr2:174047600-174056400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr2:174047600-174060800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr2:174047600-174062800	Weak transcription	GM12878-XiMat	blood
29	chr2:174047800-174050400	Enhancers	NHLF	lung
30	chr2:174047800-174050600	Enhancers	NHDF-Ad	bronchial
31	chr2:174047800-174050800	Enhancers	Osteobl	bone
32	chr2:174047800-174065800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr2:174048000-174049000	Weak transcription	Hela-S3	cervix
34	chr2:174048200-174049400	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr2:174048400-174049000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
36	chr2:174048400-174049200	Weak transcription	Pancreas	Pancrea
37	chr2:174048400-174049400	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr2:174048400-174049600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr2:174048400-174049600	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr2:174048400-174049600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr2:174048400-174049600	Flanking Active TSS	A549	lung
42	chr2:174048400-174049800	Enhancers	NH-A	brain
43	chr2:174048400-174050000	Enhancers	Stomach Smooth Muscle	stomach
44	chr2:174048400-174051000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr2:174048600-174049400	Strong transcription	Fetal Intestine Large	intestine
46	chr2:174048600-174049600	Enhancers	HSMMtube	muscle
47	chr2:174048600-174050600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr2:174048600-174050600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr2:174048600-174050800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr2:174048600-174095200	Weak transcription	Thymus	Thymus

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