Variant report

Variant	rs6434312
Chromosome Location	chr2:189907937-189907938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189906528..189908603-chr2:189912198..189915100,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10166301	1.00[CEU][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.97[AMR][1000 genomes]
rs2229495	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes]
rs3923384	1.00[CEU][hapmap]
rs4128539	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs4666770	0.85[TSI][hapmap]
rs4666772	0.95[AMR][1000 genomes]
rs4667262	1.00[CEU][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes]
rs6414122	0.95[AMR][1000 genomes]
rs7419570	0.92[AMR][1000 genomes]
rs7420715	0.85[TSI][hapmap]
rs7556733	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189888000-189917400	Weak transcription	Ovary	ovary
2	chr2:189889800-189931000	Weak transcription	Esophagus	oesophagus
3	chr2:189891600-189913600	Weak transcription	Fetal Kidney	kidney
4	chr2:189893200-189932600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:189893600-189916200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:189894000-189913800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:189894600-189932800	Weak transcription	Right Ventricle	heart
8	chr2:189895200-189909000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:189895200-189940800	Strong transcription	HSMM	muscle
10	chr2:189895600-189965200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:189896200-189962400	Weak transcription	Left Ventricle	heart
12	chr2:189896400-189922600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:189896600-189910600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:189896800-189932800	Weak transcription	Pancreas	Pancrea
15	chr2:189897000-189911000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr2:189897000-189949000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr2:189897200-189934400	Weak transcription	Gastric	stomach
18	chr2:189897400-189917400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr2:189897400-189932400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr2:189897600-189934000	Weak transcription	Lung	lung
21	chr2:189898400-189938200	Weak transcription	HMEC	breast
22	chr2:189899000-189916000	Weak transcription	Aorta	Aorta
23	chr2:189899000-189919000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:189899000-189925000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:189899000-189939200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:189900800-189964400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr2:189901000-189914200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:189901000-189919000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr2:189901200-189947400	Weak transcription	Fetal Brain Male	brain
30	chr2:189901400-189909000	Strong transcription	HSMMtube	muscle
31	chr2:189901600-189908000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr2:189901600-189911000	Strong transcription	A549	lung
33	chr2:189902000-189910600	Strong transcription	Stomach Smooth Muscle	stomach
34	chr2:189902400-189921600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:189902600-189911200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:189902600-189914600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:189902600-189937000	Strong transcription	NH-A	brain
38	chr2:189902800-189908000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr2:189902800-189908000	Strong transcription	Placenta Amnion	Placenta Amnion
40	chr2:189902800-189908200	Strong transcription	Fetal Muscle Leg	muscle
41	chr2:189902800-189914400	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr2:189902800-189914800	Strong transcription	Osteobl	bone
43	chr2:189903000-189908000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:189903000-189908000	Strong transcription	NHDF-Ad	bronchial
45	chr2:189903400-189912600	Strong transcription	Fetal Lung	lung
46	chr2:189903800-189908000	Strong transcription	Placenta	Placenta
47	chr2:189903800-189911200	Strong transcription	NHLF	lung
48	chr2:189904000-189938200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr2:189904400-189915800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr2:189904400-189916000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links