The 2.0 version of rSNPBase

Variant report

Variant rs6434388
Chromosome Location chr2:191210354-191210355
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:191205800-191216200 Weak transcription K562 blood
2 chr2:191208000-191210600 Active TSS Breast Myoepithelial Primary Cells Breast
3 chr2:191208200-191210400 Active TSS NHDF-Ad bronchial
4 chr2:191208200-191210400 Active TSS NHLF lung
5 chr2:191209000-191210400 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr2:191209200-191210400 Weak transcription Pancreas Pancrea
7 chr2:191209200-191210400 Weak transcription Small Intestine intestine
8 chr2:191209200-191210400 Flanking Active TSS HUVEC blood vessel
9 chr2:191209200-191216800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr2:191209200-191216800 Weak transcription Gastric stomach
11 chr2:191209200-191216800 Weak transcription Lung lung
12 chr2:191209200-191217200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr2:191209400-191210400 Active TSS HMEC breast
14 chr2:191209400-191213200 Weak transcription Aorta Aorta
15 chr2:191209400-191216800 Weak transcription Left Ventricle heart
16 chr2:191209400-191217200 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr2:191209400-191217800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr2:191209400-191221000 Weak transcription Placenta Placenta
19 chr2:191209400-191222800 Weak transcription Fetal Muscle Trunk muscle
20 chr2:191209400-191224600 Weak transcription Colonic Mucosa Colon
21 chr2:191209600-191210400 Enhancers Primary T helper naive cells from peripheral blood blood
22 chr2:191209600-191210400 Enhancers Cortex derived primary cultured neurospheres brain
23 chr2:191209600-191210400 Weak transcription Esophagus oesophagus
24 chr2:191209600-191210400 Weak transcription Psoas Muscle Psoas
25 chr2:191209600-191210600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr2:191209600-191211400 Enhancers Primary neutrophils fromperipheralblood blood
27 chr2:191209600-191216800 Weak transcription Fetal Stomach stomach
28 chr2:191209600-191217800 Weak transcription Fetal Muscle Leg muscle
29 chr2:191209800-191210400 Enhancers Primary T regulatory cells fromperipheralblood blood
30 chr2:191209800-191210400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr2:191209800-191210400 Enhancers Rectal Smooth Muscle rectum
32 chr2:191209800-191210400 Enhancers GM12878-XiMat blood
33 chr2:191209800-191210400 Enhancers Monocytes-CD14+_RO01746 blood
34 chr2:191209800-191210600 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
35 chr2:191209800-191210600 Enhancers Liver Liver
36 chr2:191209800-191210600 Enhancers Brain Anterior Caudate brain
37 chr2:191209800-191210600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
38 chr2:191209800-191211000 Weak transcription Hela-S3 cervix
39 chr2:191209800-191211400 Weak transcription Fetal Intestine Small intestine
40 chr2:191209800-191214800 Weak transcription HSMMtube muscle
41 chr2:191209800-191215000 Weak transcription Brain Cingulate Gyrus brain
42 chr2:191209800-191215000 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr2:191209800-191215200 Weak transcription HSMM muscle
44 chr2:191209800-191216400 Weak transcription Fetal Heart heart
45 chr2:191209800-191216600 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr2:191209800-191216600 Weak transcription Stomach Mucosa stomach
47 chr2:191209800-191216800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr2:191209800-191216800 Weak transcription Fetal Intestine Large intestine
49 chr2:191209800-191217000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr2:191209800-191217200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015