Variant report

Variant	rs6435600
Chromosome Location	chr2:211991878-211991879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10174373	0.82[EUR][1000 genomes]
rs10201265	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10804189	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10932367	0.82[EUR][1000 genomes]
rs11694662	0.84[EUR][1000 genomes]
rs12151374	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12612958	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12618320	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12619728	0.82[EUR][1000 genomes]
rs12622440	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1437372	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1437929	0.82[EUR][1000 genomes]
rs1469928	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17737553	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35652091	0.84[EUR][1000 genomes]
rs35885433	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62179762	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7421089	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7595005	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7608912	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875773	chr2:211973600-212041403	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460063	chr2:211981894-211996803	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv584311	chr2:211981894-211996803	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211991800-211993200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:211991800-211994600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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