Variant report

Variant	rs6437855
Chromosome Location	chr3:109257321-109257322
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1528901	0.84[EUR][1000 genomes]
rs1609370	0.84[EUR][1000 genomes]
rs1609371	0.84[EUR][1000 genomes]
rs1729603	0.84[EUR][1000 genomes]
rs1729608	0.84[EUR][1000 genomes]
rs1729610	0.84[EUR][1000 genomes]
rs1729614	0.85[EUR][1000 genomes]
rs1729623	0.86[EUR][1000 genomes]
rs1732173	0.84[EUR][1000 genomes]
rs1732216	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1732217	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1732219	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1732220	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1732222	0.82[EUR][1000 genomes]
rs1732223	0.86[EUR][1000 genomes]
rs2687274	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6437859	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6800450	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6803024	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs884245	0.87[EUR][1000 genomes]
rs884246	0.87[EUR][1000 genomes]
rs950690	0.85[EUR][1000 genomes]
rs9832660	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949358	chr3:108681891-109268614	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv460814	chr3:109195046-109381428	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv591268	chr3:109195046-109381428	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv470827	chr3:109195046-109433855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109248200-109259200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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