Variant report

Variant	rs6439429
Chromosome Location	chr3:133364218-133364219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133362975..133365545-chr3:133373515..133375164,3	K562	blood:
2	chr3:133356183..133358496-chr3:133362823..133365703,3	MCF-7	breast:
3	chr3:133363082..133365310-chr3:133379961..133382808,2	MCF-7	breast:
4	chr3:133358852..133360509-chr3:133363554..133365616,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000242337	Chromatin interaction
ENSG00000163781	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56219058	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61422858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62280565	1.00[ASN][1000 genomes]
rs62280567	1.00[ASN][1000 genomes]
rs6784120	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72970185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213441	1.00[ASN][1000 genomes]
rs7340547	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73861191	1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133316600-133377600	Strong transcription	Dnd41	blood
2	chr3:133316600-133378000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:133317000-133378200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr3:133317200-133378800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:133318400-133378600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:133322200-133378200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:133322600-133378800	Weak transcription	Stomach Mucosa	stomach
8	chr3:133323200-133378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:133323200-133378400	Strong transcription	Fetal Thymus	thymus
10	chr3:133323200-133378800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:133323400-133378200	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:133323600-133377800	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr3:133323800-133378800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:133324200-133378200	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:133332200-133378600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:133333400-133378000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr3:133334200-133378400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:133334400-133368800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr3:133334800-133367200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:133337400-133380000	Weak transcription	Pancreas	Pancrea
21	chr3:133338600-133368600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr3:133339800-133378000	Strong transcription	Primary B cells from cord blood	blood
23	chr3:133340200-133380000	Weak transcription	Right Ventricle	heart
24	chr3:133341200-133378800	Strong transcription	Primary B cells from peripheral blood	blood
25	chr3:133345000-133364400	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr3:133345600-133380000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:133345600-133380000	Weak transcription	Psoas Muscle	Psoas
28	chr3:133346600-133368800	Strong transcription	GM12878-XiMat	blood
29	chr3:133349400-133369000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:133349600-133378200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr3:133350800-133365200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:133351400-133368800	Strong transcription	Primary hematopoietic stem cells	blood
33	chr3:133352400-133378200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr3:133352600-133370800	Weak transcription	Lung	lung
35	chr3:133352600-133380000	Weak transcription	Esophagus	oesophagus
36	chr3:133352600-133380000	Weak transcription	Gastric	stomach
37	chr3:133352600-133380000	Weak transcription	Spleen	Spleen
38	chr3:133353000-133379800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr3:133353800-133367200	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr3:133353800-133378200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr3:133356600-133366200	Strong transcription	Thymus	Thymus
42	chr3:133357000-133366800	Weak transcription	Brain Hippocampus Middle	brain
43	chr3:133358200-133365000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr3:133359000-133368800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr3:133359000-133374800	Weak transcription	Fetal Heart	heart
46	chr3:133359200-133365200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr3:133359400-133365200	Weak transcription	Ovary	ovary
48	chr3:133359600-133377800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:133359600-133380000	Weak transcription	Aorta	Aorta
50	chr3:133360200-133368800	Strong transcription	Rectal Mucosa Donor 31	rectum

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