Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133968550..133971572-chr3:133994187..133998206,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163785	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10804626	1.00[CEU][hapmap]
rs10935102	1.00[CEU][hapmap]
rs11921688	0.94[ASN][1000 genomes]
rs11922210	1.00[CEU][hapmap]
rs11925021	1.00[CEU][hapmap]
rs11927316	1.00[CEU][hapmap]
rs12485592	1.00[CEU][hapmap]
rs12486035	1.00[CEU][hapmap]
rs12487646	1.00[CEU][hapmap]
rs12488358	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs12631354	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap]
rs12638802	1.00[CEU][hapmap]
rs4286404	1.00[CEU][hapmap]
rs4286405	1.00[CEU][hapmap]
rs4295144	1.00[CEU][hapmap]
rs4349494	1.00[CEU][hapmap]
rs4505670	1.00[CEU][hapmap]
rs6776195	1.00[CEU][hapmap]
rs6800612	1.00[CEU][hapmap]
rs7432230	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133993400-133998200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:133994600-133997200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:133994600-133997400	Enhancers	Fetal Lung	lung
4	chr3:133995000-133997200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:133995400-133997000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:133995400-133997000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:133995600-133997200	Enhancers	Fetal Stomach	stomach
8	chr3:133996000-133997000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:133996000-133997000	Enhancers	Fetal Brain Male	brain
10	chr3:133996200-133997000	Enhancers	Esophagus	oesophagus
11	chr3:133996400-133997000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:133996600-133997800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:133996800-133997000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:133996800-133997000	Enhancers	Placenta	Placenta
15	chr3:133996800-133998000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:133996800-133998000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:133996800-133998000	Weak transcription	Adipose Nuclei	Adipose

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