Variant report

Variant	rs6439533
Chromosome Location	chr3:134593768-134593769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs36166	1.00[AMR][1000 genomes]
rs39707	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134589000-134602600	Weak transcription	Psoas Muscle	Psoas
2	chr3:134590200-134593800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:134592800-134598000	Enhancers	GM12878-XiMat	blood
4	chr3:134593400-134594400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:134593400-134594400	Enhancers	Fetal Muscle Trunk	muscle
6	chr3:134593400-134595600	Enhancers	Fetal Muscle Leg	muscle
7	chr3:134593400-134597000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:134593600-134594000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:134593600-134594000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:134593600-134594000	Enhancers	Fetal Stomach	stomach
11	chr3:134593600-134594200	Enhancers	Brain Germinal Matrix	brain
12	chr3:134593600-134594200	Enhancers	Duodenum Mucosa	Duodenum
13	chr3:134593600-134594200	Enhancers	Spleen	Spleen
14	chr3:134593600-134594400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:134593600-134594400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr3:134593600-134594400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:134593600-134594400	Enhancers	Brain Anterior Caudate	brain
18	chr3:134593600-134594400	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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