Variant report

Variant	rs6439536
Chromosome Location	chr3:134618844-134618845
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10935141	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs187586	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009634	chr3:134543259-134820208	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536720	chr3:134543259-134820208	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134611400-134619600	Weak transcription	GM12878-XiMat	blood
2	chr3:134612200-134622000	Weak transcription	Brain Germinal Matrix	brain
3	chr3:134614000-134620800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:134614600-134622000	Weak transcription	Brain Anterior Caudate	brain
5	chr3:134615600-134620400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:134615800-134624200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:134616800-134619600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:134617000-134623000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:134617600-134623000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:134618000-134620400	Weak transcription	Fetal Brain Male	brain
11	chr3:134618000-134622200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:134618000-134622600	Weak transcription	Fetal Brain Female	brain
13	chr3:134618400-134619400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:134618400-134622000	Weak transcription	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links