Variant report

Variant	rs6439999
Chromosome Location	chr3:141040654-141040655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141038218..141041053-chr3:141044225..141046935,2	K562	blood:
2	chr3:141039246..141041053-chr3:141044683..141046935,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13088239	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13094525	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1983233	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2871887	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683600	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6778010	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807533	0.96[ASN][1000 genomes]
rs72986540	0.93[ASN][1000 genomes]
rs72986545	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv460871	chr3:141027614-141074962	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv591893	chr3:141027614-141074962	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141031800-141047400	Weak transcription	Right Ventricle	heart
2	chr3:141039000-141041000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:141039000-141041200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr3:141039000-141041400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:141039200-141040800	Enhancers	Primary T cells from cord blood	blood
6	chr3:141039200-141041000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr3:141039200-141041000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:141039200-141041000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:141039200-141041200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr3:141039400-141040800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:141039400-141040800	Enhancers	HUVEC	blood vessel
12	chr3:141039600-141041400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:141039600-141042800	Enhancers	Fetal Intestine Large	intestine
14	chr3:141039800-141042000	Weak transcription	HepG2	liver
15	chr3:141039800-141042800	Enhancers	Fetal Intestine Small	intestine
16	chr3:141040000-141041000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr3:141040000-141041200	Enhancers	Small Intestine	intestine
18	chr3:141040000-141041400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr3:141040000-141042800	Weak transcription	K562	blood
20	chr3:141040200-141041000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:141040200-141041400	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr3:141040200-141042000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:141040200-141042400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:141040200-141044000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:141040200-141044600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:141040200-141045200	Weak transcription	Lung	lung
27	chr3:141040400-141042800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr3:141040400-141043000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr3:141040600-141041800	Weak transcription	NHDF-Ad	bronchial
30	chr3:141040600-141042200	Weak transcription	A549	lung
31	chr3:141040600-141045200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:141040600-141049000	Weak transcription	Hela-S3	cervix
33	chr3:141040600-141049200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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