Variant report

Variant	rs6440005
Chromosome Location	chr3:141136022-141136023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141050917..141052882-chr3:141133782..141136338,2	K562	blood:
2	chr3:141119463..141121606-chr3:141135948..141138544,2	MCF-7	breast:
3	chr3:141119613..141122470-chr3:141135749..141139240,4	MCF-7	breast:
4	chr3:141085279..141086915-chr3:141134988..141137791,2	K562	blood:
5	chr3:141125595..141129103-chr3:141133581..141136725,3	K562	blood:
6	chr3:141134135..141137819-chr3:141137972..141141592,4	K562	blood:
7	chr3:141130018..141132073-chr3:141134361..141136631,2	K562	blood:
8	chr3:141133859..141137101-chr3:141144302..141145927,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000249417	Chromatin interaction
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11925260	1.00[CEU][hapmap]
rs6764191	0.83[AFR][1000 genomes]
rs6795398	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141126800-141138000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:141131200-141139200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:141131600-141138800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:141131600-141144400	Strong transcription	Fetal Intestine Large	intestine
5	chr3:141131600-141145200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:141131800-141136200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:141131800-141136200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:141131800-141136200	Genic enhancers	Lung	lung
9	chr3:141131800-141144600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:141131800-141161200	Weak transcription	Thymus	Thymus
11	chr3:141132000-141137400	Genic enhancers	Left Ventricle	heart
12	chr3:141132200-141136400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr3:141132200-141138000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:141132200-141138600	Strong transcription	Primary B cells from peripheral blood	blood
15	chr3:141132200-141141000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:141132200-141144400	Strong transcription	Fetal Intestine Small	intestine
17	chr3:141132200-141144800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
19	chr3:141132400-141136200	Genic enhancers	NHDF-Ad	bronchial
20	chr3:141132400-141137600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:141132400-141139000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:141132600-141136400	Strong transcription	Fetal Lung	lung
23	chr3:141132600-141136600	Genic enhancers	Duodenum Smooth Muscle	Duodenum
24	chr3:141132600-141139000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:141132600-141139200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:141132800-141136200	Strong transcription	Fetal Brain Female	brain
27	chr3:141132800-141137800	Strong transcription	HSMMtube	muscle
28	chr3:141132800-141138400	Strong transcription	HSMM	muscle
29	chr3:141133000-141139000	Genic enhancers	Right Ventricle	heart
30	chr3:141133200-141138400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:141133400-141136400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr3:141133400-141137000	Strong transcription	Placenta	Placenta
33	chr3:141133400-141138400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:141133600-141137000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr3:141133600-141138200	Strong transcription	Fetal Stomach	stomach
36	chr3:141133600-141139000	Strong transcription	Fetal Muscle Leg	muscle
37	chr3:141133600-141139200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:141133600-141140600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr3:141133800-141136200	Strong transcription	NHEK	skin
40	chr3:141133800-141137200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr3:141133800-141140400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr3:141133800-141140600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr3:141133800-141158400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:141133800-141158400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr3:141134000-141138600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr3:141134000-141138800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:141134000-141138800	Weak transcription	Spleen	Spleen
48	chr3:141134000-141146800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr3:141134000-141161600	Weak transcription	Fetal Brain Male	brain
50	chr3:141134200-141136800	Weak transcription	Primary monocytes fromperipheralblood	blood

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