Variant report

Variant	rs6440035
Chromosome Location	chr3:141474351-141474352
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141466931..141469705-chr3:141473220..141475379,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2677422	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2677424	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141461800-141498200	Weak transcription	Right Ventricle	heart
2	chr3:141465000-141481400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:141466200-141474400	Weak transcription	Primary B cells from cord blood	blood
4	chr3:141466200-141475800	Weak transcription	Psoas Muscle	Psoas
5	chr3:141466600-141475200	Weak transcription	Esophagus	oesophagus
6	chr3:141467000-141474400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:141467000-141474800	Weak transcription	Spleen	Spleen
8	chr3:141467000-141477000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:141467000-141481600	Weak transcription	Lung	lung
10	chr3:141467000-141483400	Weak transcription	Fetal Lung	lung
11	chr3:141467200-141475200	Weak transcription	Fetal Brain Female	brain
12	chr3:141467200-141475800	Weak transcription	Primary T cells from cord blood	blood
13	chr3:141467400-141476000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr3:141469800-141474600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:141469800-141474600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:141470000-141474800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:141470000-141481400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:141470000-141481600	Weak transcription	Placenta	Placenta
19	chr3:141470000-141482600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:141470000-141483400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:141470000-141483400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr3:141470000-141483400	Weak transcription	Fetal Stomach	stomach
23	chr3:141470000-141483600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr3:141470000-141486400	Weak transcription	Brain Hippocampus Middle	brain
25	chr3:141470400-141482200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr3:141470800-141483400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:141471200-141475600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:141471600-141483600	Weak transcription	Fetal Thymus	thymus
29	chr3:141471800-141483600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr3:141472000-141500800	Weak transcription	Thymus	Thymus
31	chr3:141472400-141474600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr3:141472400-141474600	Weak transcription	Fetal Muscle Leg	muscle
33	chr3:141472600-141484800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr3:141473200-141474800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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