Variant report

Variant	rs6440746
Chromosome Location	chr3:151190909-151190910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151189546..151191159-chr3:151195430..151197288,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10935854	0.95[AMR][1000 genomes]
rs12485986	0.81[AMR][1000 genomes]
rs4296568	0.84[AMR][1000 genomes]
rs4387942	0.91[AMR][1000 genomes]
rs4452303	0.84[AMR][1000 genomes]
rs4475011	0.88[AMR][1000 genomes]
rs4518099	0.87[AMR][1000 genomes]
rs4550806	0.91[AMR][1000 genomes]
rs4618202	0.91[AMR][1000 genomes]
rs4679835	0.89[AMR][1000 genomes]
rs4680474	0.83[AMR][1000 genomes]
rs6440747	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6440749	0.83[AMR][1000 genomes]
rs6440765	0.82[AMR][1000 genomes]
rs6768085	0.81[AMR][1000 genomes]
rs6773513	0.95[AMR][1000 genomes]
rs6775810	0.89[AMR][1000 genomes]
rs6778090	0.82[AMR][1000 genomes]
rs6779571	0.95[AMR][1000 genomes]
rs6784030	0.91[AMR][1000 genomes]
rs6785746	0.91[AMR][1000 genomes]
rs6789689	0.84[AMR][1000 genomes]
rs6810156	0.91[AMR][1000 genomes]
rs7612205	0.86[AMR][1000 genomes]
rs7615828	0.95[AMR][1000 genomes]
rs7624653	0.86[AMR][1000 genomes]
rs7631871	0.83[AMR][1000 genomes]
rs7638109	0.91[AMR][1000 genomes]
rs9811627	0.81[AMR][1000 genomes]
rs9815081	0.84[AMR][1000 genomes]
rs9821160	0.86[AMR][1000 genomes]
rs9840578	0.86[AMR][1000 genomes]
rs9841913	0.86[AMR][1000 genomes]
rs9855531	0.81[AMR][1000 genomes]
rs9876367	0.83[AMR][1000 genomes]
rs9881269	0.84[AMR][1000 genomes]
rs9882955	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv877649	chr3:151147968-151236562	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151179200-151194200	Weak transcription	Ovary	ovary
2	chr3:151188600-151194000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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