Variant report

Variant	rs6441049
Chromosome Location	chr3:155915609-155915610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1120745	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11713991	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11915771	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11915832	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11922447	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1391889	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1391890	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1499051	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1499056	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1546229	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1909372	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1909373	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1909374	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1909375	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1909376	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4271877	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4333049	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4355235	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4453801	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4505650	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4530487	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4577423	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4634068	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4679764	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4680249	0.88[AMR][1000 genomes]
rs6441046	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6441050	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6441051	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6788238	0.87[AMR][1000 genomes]
rs6806129	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs728382	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7611194	0.85[AMR][1000 genomes]
rs7612532	0.81[EUR][1000 genomes]
rs7621586	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7633871	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7634800	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7638421	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7640712	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9857202	0.88[AMR][1000 genomes]
rs9864967	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9866991	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155870400-155917800	Weak transcription	Aorta	Aorta
2	chr3:155905800-155919200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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