Variant report

Variant	rs6441555
Chromosome Location	chr3:100599099-100599100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1017439	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370160	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1370161	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1436941	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1836986	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1836988	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1987384	0.84[AFR][1000 genomes]
rs2083008	0.84[AFR][1000 genomes]
rs2118172	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3821725	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4328836	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928093	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4928095	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6786325	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6786332	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6793103	0.81[EUR][1000 genomes]
rs9290245	0.82[EUR][1000 genomes]
rs975536	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878937	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv514163	chr3:100547342-100670846	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100583800-100603400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:100593200-100601600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:100594400-100618200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:100594600-100616800	Weak transcription	Ovary	ovary
5	chr3:100594800-100599800	Weak transcription	Hela-S3	cervix
6	chr3:100595200-100600000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:100595400-100599200	Weak transcription	Osteobl	bone
8	chr3:100596800-100599200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:100597400-100599600	Enhancers	Fetal Muscle Leg	muscle
10	chr3:100597600-100600200	Enhancers	Adipose Nuclei	Adipose
11	chr3:100597800-100599200	Enhancers	Stomach Smooth Muscle	stomach
12	chr3:100597800-100599800	Enhancers	Fetal Lung	lung
13	chr3:100597800-100599800	Enhancers	Fetal Stomach	stomach
14	chr3:100598000-100599200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr3:100598000-100599600	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr3:100598000-100599600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr3:100598200-100599400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:100598400-100600200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:100598600-100599200	Enhancers	HSMMtube	muscle
20	chr3:100598600-100599600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:100598600-100600200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:100598600-100602200	Enhancers	NHDF-Ad	bronchial
23	chr3:100598600-100612400	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:100598800-100599600	Enhancers	NHLF	lung
25	chr3:100599000-100599600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:100599000-100599600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:100599000-100599600	Enhancers	Psoas Muscle	Psoas
28	chr3:100599000-100599800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links