The 2.0 version of rSNPBase

Variant report

Variant rs6441978
Chromosome Location chr3:46453994-46453995
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:46438800-46459800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr3:46448600-46460000 Weak transcription Gastric stomach
3 chr3:46449600-46454000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr3:46449600-46457600 Weak transcription Primary B cells from cord blood blood
5 chr3:46450000-46457600 Weak transcription Stomach Mucosa stomach
6 chr3:46450000-46457800 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr3:46450200-46454200 Weak transcription Fetal Lung lung
8 chr3:46450200-46456800 Weak transcription Fetal Intestine Large intestine
9 chr3:46450200-46457400 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr3:46450200-46457600 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr3:46450400-46454200 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr3:46450600-46454000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr3:46450600-46454000 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr3:46450600-46457000 Weak transcription Duodenum Mucosa Duodenum
15 chr3:46450800-46454000 Weak transcription Psoas Muscle Psoas
16 chr3:46451000-46457600 Weak transcription Primary monocytes fromperipheralblood blood
17 chr3:46451600-46458400 Enhancers Fetal Heart heart
18 chr3:46451800-46454000 Weak transcription Monocytes-CD14+_RO01746 blood
19 chr3:46451800-46456800 Weak transcription Fetal Intestine Small intestine
20 chr3:46452000-46454200 Weak transcription K562 blood
21 chr3:46452000-46454400 Weak transcription Dnd41 blood
22 chr3:46452200-46454200 Weak transcription Primary T cells from cord blood blood
23 chr3:46452400-46454200 Weak transcription HSMM muscle
24 chr3:46452600-46454200 Weak transcription Thymus Thymus
25 chr3:46452600-46455000 Weak transcription Placenta Placenta
26 chr3:46452600-46456800 Weak transcription Spleen Spleen
27 chr3:46452800-46454000 Weak transcription Right Ventricle heart
28 chr3:46452800-46456400 Weak transcription Lung lung
29 chr3:46452800-46457400 Weak transcription Left Ventricle heart
30 chr3:46453000-46454400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr3:46453600-46454200 Enhancers HUVEC blood vessel
32 chr3:46453600-46455800 Enhancers Primary hematopoietic stem cells blood
33 chr3:46453600-46456200 Enhancers Fetal Thymus thymus
34 chr3:46453800-46454000 Enhancers Primary neutrophils fromperipheralblood blood
35 chr3:46453800-46454000 Enhancers Placenta Amnion Placenta Amnion
36 chr3:46453800-46454200 Enhancers Small Intestine intestine
37 chr3:46453800-46454400 Enhancers Right Atrium heart
38 chr3:46453800-46454800 Enhancers Pancreatic Islets Pancreatic Islet
39 chr3:46453800-46455400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr3:46453800-46455800 Enhancers Adipose Nuclei Adipose
41 chr3:46453800-46456000 Enhancers Primary hematopoietic stem cells short term culture blood
42 chr3:46453800-46456000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015