Variant report

Variant	rs6445633
Chromosome Location	chr3:54230638-54230639
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2359784	1.00[ASN][1000 genomes]
rs4345101	0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs4352397	1.00[ASN][1000 genomes]
rs4928007	1.00[ASN][1000 genomes]
rs6445631	0.82[MEX][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs6795550	0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs72976725	1.00[ASN][1000 genomes]
rs73083991	1.00[ASN][1000 genomes]
rs7649696	1.00[ASN][1000 genomes]
rs9829714	0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs9844833	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1006990	chr3:53849510-54285212	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1014157	chr3:54168755-54332321	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv518483	chr3:54212182-54259801	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54227200-54232200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:54227600-54232600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:54227800-54232600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:54228000-54232200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:54229400-54233000	Enhancers	Brain Germinal Matrix	brain
6	chr3:54229600-54231400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:54230000-54231000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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