Variant report

Variant	rs6446959
Chromosome Location	chr4:74638217-74638218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:74636966..74638791-chr4:74640167..74642281,2	K562	blood:
2	chr4:74605839..74608287-chr4:74637103..74638834,2	K562	blood:
3	chr4:74612735..74615091-chr4:74635829..74638388,2	K562	blood:

Variant related genes	Relation type
ENSG00000169429	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10005565	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10009462	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10009488	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10010970	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10012962	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10015626	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10019318	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10031141	0.82[EUR][1000 genomes]
rs10938092	0.89[EUR][1000 genomes]
rs10938094	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10938095	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10938096	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10938097	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10938100	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10938101	0.84[EUR][1000 genomes]
rs1126647	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11730284	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11730560	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11730667	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11733222	0.87[EUR][1000 genomes]
rs11938389	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12503139	0.82[ASN][1000 genomes]
rs12644561	0.82[ASN][1000 genomes]
rs13106097	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13109146	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13109377	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13112910	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13116536	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13117876	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13151869	0.82[ASN][1000 genomes]
rs16849928	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16849945	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16849958	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1951235	0.84[ASN][1000 genomes]
rs1951236	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1951240	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1951242	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1957070	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1957661	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2145617	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2224434	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2227306	0.87[EUR][1000 genomes]
rs2227307	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2227521	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2227543	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2367276	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28609798	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28612337	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28833215	0.88[EUR][1000 genomes]
rs2886920	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2886922	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4073	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4279174	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4549349	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4694178	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4694636	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4694637	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62312370	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6446960	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6446961	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6820848	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6831029	0.89[EUR][1000 genomes]
rs6851997	0.86[EUR][1000 genomes]
rs6853679	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7689435	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9999262	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9999446	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1005231	chr4:74555497-74680079	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74636400-74641600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:74637200-74641400	Weak transcription	Liver	Liver
3	chr4:74637200-74641400	Weak transcription	Stomach Mucosa	stomach
4	chr4:74637200-74642000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr4:74637200-74646400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:74637400-74638400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr4:74637800-74641400	Weak transcription	Small Intestine	intestine
8	chr4:74638200-74642200	Weak transcription	Primary monocytes fromperipheralblood	blood

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