Variant report

Variant	rs6446966
Chromosome Location	chr4:74724920-74724921
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10938103	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs16849934	1.00[MEX][hapmap]
rs1957074	1.00[MEX][hapmap]
rs6828610	0.81[YRI][hapmap]
rs7688147	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv432612	chr4:74723372-74774372	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74719400-74727800	Weak transcription	NHLF	lung
2	chr4:74719400-74733600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:74721400-74726000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:74721400-74729200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr4:74722200-74725000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:74723000-74728000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:74723200-74725200	Weak transcription	Liver	Liver
8	chr4:74723800-74725200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:74724200-74730600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:74724400-74726600	Enhancers	Fetal Kidney	kidney
11	chr4:74724600-74725400	Enhancers	Dnd41	blood
12	chr4:74724600-74725800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:74724600-74726200	Enhancers	Fetal Lung	lung
14	chr4:74724800-74725000	Enhancers	Right Atrium	heart
15	chr4:74724800-74725600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:74724800-74725600	Enhancers	Fetal Stomach	stomach
17	chr4:74724800-74726000	Enhancers	NH-A	brain
18	chr4:74724800-74726800	Enhancers	Osteobl	bone
19	chr4:74724800-74727000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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