Variant report

Variant	rs6448009
Chromosome Location	chr4:21059144-21059145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10014546	0.80[EUR][1000 genomes]
rs11929857	0.85[ASN][1000 genomes]
rs11932046	0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap]
rs11939115	0.95[CHB][hapmap];0.83[CHD][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs1368643	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1368649	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1560787	0.95[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs1579554	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap]
rs1821330	0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs1836091	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap]
rs1897666	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1897667	0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs1978739	0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap]
rs2322846	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs4296672	0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs4318646	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4414947	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4444829	0.85[ASN][1000 genomes]
rs57132503	0.85[ASN][1000 genomes]
rs6448012	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6448017	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.85[ASN][1000 genomes]
rs6815319	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6819921	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs6820317	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6835062	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs6839939	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap]
rs719618	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7668004	0.95[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap];0.85[ASN][1000 genomes]
rs7680373	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7684200	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7689062	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs9992270	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9994056	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv829878	chr4:20966047-21138626	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv878745	chr4:21054348-21155716	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv878746	chr4:21054348-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv878747	chr4:21057794-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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