Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:31145390..31148497-chr4:31150587..31153361,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10030161	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1044352	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1044353	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1463845	0.86[ASN][1000 genomes]
rs1463846	0.88[ASN][1000 genomes]
rs1463847	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1463848	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1463849	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1499476	0.82[EUR][1000 genomes]
rs16884451	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16884471	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16884473	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1846526	0.82[EUR][1000 genomes]
rs28483036	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28498976	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4692500	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6448743	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6818974	0.88[ASN][1000 genomes]
rs6820584	0.82[EUR][1000 genomes]
rs7655744	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7671046	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7674487	0.82[EUR][1000 genomes]
rs7674790	0.82[EUR][1000 genomes]
rs7686226	0.87[ASN][1000 genomes]
rs952617	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv290639	chr4:31151466-31151987	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31145600-31154400	Weak transcription	Fetal Heart	heart
2	chr4:31151400-31152600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:31151600-31152800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:31151600-31158400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:31151800-31158000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:31151800-31158000	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search: