Variant report

Variant	rs6450445
Chromosome Location	chr5:57178493-57178494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs6450443	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6867553	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6872898	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6882767	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6884419	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6885633	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7705941	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7716769	0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7716955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7723226	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7726215	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7733688	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57175000-57185200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:57176600-57183400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:57178400-57179200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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