Variant report

Variant	rs6450510
Chromosome Location	chr5:58477303-58477304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10058671	0.82[ASN][1000 genomes]
rs10058676	0.87[ASN][1000 genomes]
rs2277013	1.00[ASN][1000 genomes]
rs35425879	0.87[ASN][1000 genomes]
rs56806392	0.91[ASN][1000 genomes]
rs57454281	0.89[ASN][1000 genomes]
rs59378572	0.91[ASN][1000 genomes]
rs59840765	0.89[ASN][1000 genomes]
rs59992142	0.89[ASN][1000 genomes]
rs72764076	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58439000-58484000	Weak transcription	Fetal Kidney	kidney
2	chr5:58447600-58479600	Weak transcription	Left Ventricle	heart
3	chr5:58449800-58489400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:58461000-58484200	Weak transcription	HUVEC	blood vessel
5	chr5:58464200-58484000	Weak transcription	Brain Anterior Caudate	brain
6	chr5:58464200-58485400	Weak transcription	Aorta	Aorta
7	chr5:58464800-58478800	Weak transcription	Hela-S3	cervix
8	chr5:58466200-58479400	Weak transcription	Psoas Muscle	Psoas
9	chr5:58469000-58483800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:58469200-58484400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr5:58469800-58478400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:58470000-58483400	Weak transcription	Fetal Lung	lung
13	chr5:58470200-58481400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:58470600-58480600	Weak transcription	Fetal Heart	heart
15	chr5:58470600-58482000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr5:58470600-58483800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr5:58471000-58479000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:58471000-58483600	Weak transcription	Brain Angular Gyrus	brain
19	chr5:58471000-58483800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr5:58471000-58484800	Weak transcription	Pancreas	Pancrea
21	chr5:58471600-58484200	Weak transcription	Brain Germinal Matrix	brain
22	chr5:58472000-58479000	Weak transcription	Gastric	stomach
23	chr5:58472000-58484400	Weak transcription	Primary B cells from cord blood	blood
24	chr5:58472200-58485800	Weak transcription	Stomach Mucosa	stomach
25	chr5:58472400-58480800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr5:58472800-58484200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr5:58473800-58478600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:58474400-58520000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr5:58474600-58478600	Weak transcription	Fetal Muscle Leg	muscle
30	chr5:58474600-58478800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr5:58474600-58478800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr5:58474600-58481200	Weak transcription	Colon Smooth Muscle	Colon
33	chr5:58474600-58483600	Weak transcription	Fetal Brain Female	brain
34	chr5:58474600-58484400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr5:58474800-58478400	Weak transcription	HSMMtube	muscle
36	chr5:58474800-58481000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr5:58474800-58484400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr5:58474800-58484800	Weak transcription	Fetal Intestine Small	intestine
39	chr5:58474800-58491000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr5:58475000-58478600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr5:58475000-58479600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr5:58475000-58484400	Weak transcription	Right Ventricle	heart
43	chr5:58475200-58478800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr5:58475200-58484200	Weak transcription	Fetal Stomach	stomach
45	chr5:58475800-58484800	Weak transcription	Fetal Intestine Large	intestine
46	chr5:58476200-58479600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr5:58476400-58478800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr5:58476400-58479600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr5:58476600-58478600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:58476800-58484200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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