Variant report

Variant	rs6452401
Chromosome Location	chr5:80652331-80652332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11740623	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11741065	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11741735	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745197	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11749621	1.00[ASN][1000 genomes]
rs56020218	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57817848	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6452402	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72771187	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717621	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717804	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80647200-80654000	Enhancers	Liver	Liver
2	chr5:80649200-80657400	Weak transcription	Gastric	stomach
3	chr5:80649600-80653000	Enhancers	HepG2	liver
4	chr5:80650400-80655200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:80651000-80655000	Weak transcription	Fetal Intestine Small	intestine
6	chr5:80651600-80655000	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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