Variant report

Variant	rs6455651
Chromosome Location	chr6:159926784-159926785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55875257	0.83[EUR][1000 genomes]
rs6931176	0.82[AFR][1000 genomes]
rs6935224	0.95[EUR][1000 genomes]
rs73586921	0.83[EUR][1000 genomes]
rs73586924	0.83[EUR][1000 genomes]
rs73586925	0.83[EUR][1000 genomes]
rs73586928	0.83[EUR][1000 genomes]
rs73586930	0.84[EUR][1000 genomes]
rs73586931	0.85[EUR][1000 genomes]
rs73586936	0.85[EUR][1000 genomes]
rs7743711	0.88[EUR][1000 genomes]
rs7754221	0.98[EUR][1000 genomes]
rs7760303	0.83[EUR][1000 genomes]
rs7772414	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763604	chr6:159509373-159942955	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1019191	chr6:159555100-160043247	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv886800	chr6:159905527-159985424	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886801	chr6:159912337-159984005	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1026518	chr6:159912363-160113542	Active TSS Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv538491	chr6:159912363-160113542	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv886802	chr6:159922571-159984005	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886803	chr6:159922571-159985424	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6455651	LPAL2	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:159916000-159927400	Weak transcription	Right Atrium	heart
2	chr6:159924000-159927600	Weak transcription	Spleen	Spleen
3	chr6:159925200-159927600	Enhancers	Fetal Muscle Leg	muscle
4	chr6:159925600-159927600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr6:159926200-159927600	Enhancers	Fetal Muscle Trunk	muscle
6	chr6:159926400-159927200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:159926400-159927400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:159926400-159927400	Enhancers	Adipose Nuclei	Adipose
9	chr6:159926600-159927000	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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